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Intrinsic Pathway freeware
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Intrinsic Pathway

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Released: August 30, 2010  |  Added: September 03, 2010 | Visits: 4.775

Advanced Pathway Painter This freeware program visualizes pathways (KEGG, BioCarta, GenMAPP, ...). The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). The linking between the pathway items and the experiment...



Platforms: Windows

License: Freeware Size: 4.54 MB Download (294): Advanced Pathway Painter Download

Released: August 19, 2012  |  Added: August 19, 2012 | Visits: 415

Flagstone Pathway Internet Toobar - Flagstone Pathway Installation Info - Flagstone Patio info - This Tool Bar have search option by which you can search web easilly. You can easily get Twitter messeges right on your Tool bar. You can also listen Radio on a click. you can tune RAP & Blues Radio stations. we have...





Platforms: All

License: Freeware Size: 1.52 MB Download (28): Flagstone Pathway Download

Released: October 21, 2012  |  Added: October 21, 2012 | Visits: 255

Biological Pathway Exchange Language BioPAX - A Data Exchange Format for Biological Pathway Information


Platforms: Windows, Mac, Linux

License: Freeware Size: 6.57 MB Download (27): Biological Pathway Exchange Language Download

Added: October 13, 2013 | Visits: 169

PaViAn A Tool that manages Pathway Retrieval, Visualization and Analysis. Import a Gene or Protein Set from any Excel file. Find matching Pathways from KEGG. Integrate, visualze and analyze your Data in Seconds with interactive Force-directed Layout .


Platforms: Mac

License: Freeware Size: 9.01 MB Download (18): PaViAn Download

Added: January 25, 2010 | Visits: 542

Pathway Pathway is a semantic browser that tracks your steps through MediaWiki sites such as Wikipedia. It represents visited pages by nodes, which are interconnected to form the trail that you've made. This enables you to keep a clear overview of your wiki explorations.


Platforms: Mac

License: Freeware Download (78): Pathway Download

Released: December 19, 2012  |  Added: December 19, 2012 | Visits: 295

Mad Shapes Collect all the shapes by constructing a pathway to match your creates shapes with the ones inside each level. The levels will get more complicated as you progress through the game. There is also a walkthrough available that will guide you through each level for the players that got stuck, have fun!


Platforms: Windows

License: Freeware Size: 2.89 MB Download (78): Mad Shapes Download

Released: October 23, 2012  |  Added: October 23, 2012 | Visits: 294

CytoSEED:Cytoscape plugin for Model SEED This project implements a Cytoscape plugin for viewing and manipulating pathway maps for metabolic models created by the Model SEED (http://www.theseed.org/models). See the 'Files' area for README. See Project Homepage for Tutorial.


Platforms: Windows, Mac

License: Freeware Size: 3.21 MB Download (28): CytoSEED:Cytoscape plugin for Model SEED Download

Released: December 15, 2012  |  Added: December 15, 2012 | Visits: 213

EPE The Edinburgh Pathway Editor (EPE) is a tool and framework that allows the drawing and manipulation of Biological Networks, such as signalling or matabolic pathways. The editor supports several notations including SBGN and Cytoscape notations.


Platforms: Windows, Mac

License: Freeware Size: 94.53 MB Download (27): EPE Download

Released: November 22, 2012  |  Added: November 22, 2012 | Visits: 221

EPPA (Emulate ProteinPathway Application The goal of this project is to make a biologic pathway simulation / emulation application. The ultimate goal is to feed different file types to the application and configure a pathway and its behaviour.


Platforms: Windows, Mac, Linux

License: Freeware Size: 9.6 MB Download (29): EPPA (Emulate ProteinPathway Application Download

Released: July 13, 2012  |  Added: July 13, 2012 | Visits: 240

SBMLforge SBMLforge is a tool that enables the user to convert and merge KEGG metabolic and signaling pathways (KGML format) to create a single SBML pathway model.


Platforms: Windows, Mac, Linux

License: Freeware Size: 27.66 MB Download (27): SBMLforge Download

Released: June 03, 2012  |  Added: June 03, 2012 | Visits: 235

ViennaData ViennaData is a C++ library that allows to separate intrinsic properties of a class from data associated to objects of that class. This allows to write code that is much more reusable than traditional designs.


Platforms: Windows, Mac, BSD, Linux

License: Freeware Size: 517.54 KB Download (27): ViennaData Download

Added: July 31, 2013 | Visits: 271

Empirical Mode Decomposition The Empirical Mode Decomposition is a technique to decompose a given signal into a set of elemental signals called Intrinsic Mode Functions. The Empirical Mode Decomposition is the base of the so-called d-deDUHilbert-Huang Transformd-deDt that comprises also a Hilbert Spectral Analysis and an...


Platforms: Matlab

License: Freeware Size: 10 KB Download (21): Empirical Mode Decomposition Download

Added: June 13, 2013 | Visits: 196

CONFIGR (CONtour FIgure and GRound) This software has been realized at the CNS Technology Lab at Boston University - http://techlab.bu.edu. The main author of this software is Chaitanya Sai ( http://techlab.bu.edu/members/sai/ ).CONFIGR (CONtour FIgure GRound) is a computational model based on principles of biological vision that...


Platforms: Matlab

License: Freeware Size: 256 KB Download (19): CONFIGR (CONtour FIgure and GRound) Download

Added: March 27, 2013 | Visits: 235

typecast and typecastx C-mex functions TYPECAST and TYPECASTX are mex functions intended to mimic the MATLAB intrinsic typecast function with extensions. These C-mex versions of typecast differs from the intrinsic typecast in the following important aspects: Intrinsic typecast------------------Type of copy: Deep Data CopyAllows...


Platforms: Matlab

License: Freeware Size: 10 KB Download (18): typecast and typecastx C-mex functions Download

Added: July 16, 2013 | Visits: 203

reshape0, reshaping with padding or truncating Reshapes an array like the MATLAB intrinsic reshape function. But reshape0 does not require that the total number of elements must remain the same. If the new array is larger, then it will be zero or blank padded. If the new array is smaller, then it will be a truncated...


Platforms: PHP

License: Freeware Size: 10 KB Download (18): reshape0, reshaping with padding or truncating Download

Added: August 15, 2013 | Visits: 312

The PHP JPEG Metadata Toolkit The PHP JPEG Metadata Toolkit is free and Open Source PHP Project designed to allow manipulation of many types of metadata that reside in a JPEG image file. Five types of metadata that can be accessed by this project:- EXIF, DCF & TIFF/EP including makernotes: Contains Digital Camera Settings....


Platforms: PHP

License: Freeware Size: 296.96 KB Download (19): The PHP JPEG Metadata Toolkit Download

Added: June 15, 2013 | Visits: 207

PathVisio PathVisio is a tool for displaying and editing biological pathways. In a sense PathVisio lets you draw pathways as you would in any drawing program, like PowerPoint or Photoshop. But the difference is that PathVisio can understand the biological context of a pathway, because you can link...


Platforms: Mac

License: Freeware Size: 10.24 KB Download (16): PathVisio Download

Added: November 30, 2013 | Visits: 211

SVG Import SVG support is one of the most requested features for . There are two options, either SVG import for manipulating SVG graphics within as described in Issue:2497, or embedding SVG graphics "display-only" within documents as described in Issue:49991. Both options have their intrinsic benefits and...


Platforms: *nix

License: Freeware Size: 5.6 MB Download (18): SVG Import Download

Added: July 27, 2013 | Visits: 235

GeXpert GeXpert is an expert system that can be used for genetics and metabolic pathway analysis. GeXpert can help Biotechnologists do their work faster, reducing the time required for performing, analyzing and storing the results of Bioinformatics research.


Platforms: *nix

License: Freeware Size: 41.58 MB Download (17): GeXpert Download

Added: April 21, 2006 | Visits: 3.883

Descartes Displays graphs of algebraic functions in a variety of forms. These include polar and cartesian co-ordinates, parametric and intrinsic functions. A wide range of functions are built-in, from simple trig and hyperbolic functions to things such as the ceil and gamma functions. On-screen HTML help...


Platforms: Windows

License: Freeware Size: 150 KB Download (291): Descartes Download

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